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Align your sequence(s)

Pectin/pectate lyase

class : all beta number of structures : 4 average size : 367 average PID : 30 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
2bsp rasmol 1 A 399 A pectate lyase r279k mutant Bacillus subtilis 1.8 19.6
1idk rasmol 1 - 359 - pectin lyase A Aspergillus niger 1.9 18.8
2pec rasmol 1 - 352 - pectate lyase C Erwinia chrysanthemi 2.2 17.97
1qcx rasmol 1 A 359 A pectin lyase B Aspergillus niger 1.70 16.2
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : pec_lyase  
CAZy : PL_1  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
2bspa  (   1 )    adLGhqtLgsndGwGAystgTtGGs--kAsssnvytVsnrnqLvsALgke
1idk   (   1 )        vgvsgsAeGFAk---gVtGGg--sat---pvyPdtideLvsyLgdd
2pec   (   1 )         atd--TgGyAa----TaGGnvtgav---sktAtsmqdIvniIdaA
1qcxa  (   1 )        agvvgaAeGFAh---gVtGGg--sas---pvyPtttdeLvsyLgdn
                               33                        aaaaaaaaa  

                           60        70        80        90        100 
2bspa  (  49 )    ----------tnttpKIIyIkgtIdMnvdd------nlkplglndYkdpe
1idk   (  39 )    -------------earVIVLtktFdFtdsegtttgtGÇApwgtasaÇQvA
2pec   (  37 )    rldangkkvkgGaypLvItYtgn-eds-----------------------
1qcxa  (  39 )    -------------eprVIILdqtFdFtgtegtetttGÇAPwgtasqÇQvA
                                 bbbbb  bbb                         

                           110       120       130       140       150 
2bspa  (  83 )    YdldkYlkaYdpstwgkkePsgtqeeArarSqknQkarVmvdIPa---nT
1idk   (  76 )    IdqddwÇenyepdapsvsVeyy-------nAGt-----lGItVts---nK
2pec   (  63 )    -lInaAaa-------------------niçgQws-kdprGVeIkeFtkGI
1qcxa  (  76 )    InlhswçdnyqasapkvsVtyd-------kAGi-----lpItVns---nK
                       aaaaa                              bb       b

                           160       170       180       190       200 
2bspa  ( 130 )    TIVGsgtnAkVvGGNFqIk--sdnVIIrNIeFqDAyDyFPqWdPtdgssG
1idk   ( 111 )    SLIGegssGaIkgkGLrIvsgAenIIIQNIaVtdInpk------------
2pec   (  92 )    TIiGan-gSSANFGIwIkk--SsdVVVqnMrIGyLPGGak----------
1qcxa  ( 111 )    SIVGqgtkGvIkgkGLrVvsgaknVIIQnIaVtdInpk------------
                  bbbb     bbb   bbb      bbbb  bbb                 

                           210       220       230       240       250 
2bspa  ( 178 )    nWnSqYdNItIngGthIwIDhCtFnDgsrpdstspky-ygrkyQhHdGQT
1idk   ( 149 )    -yVwGgdAItLddCdlVWIDhVtTArIG------------------rQHY
2pec   ( 129 )    ----dGDMIrVddSpnVwVDHNeLfA---anheÇdgTpdn--dtTFeSAV
1qcxa  ( 149 )    -yVwGgdAItVddSdlVWIDhVtTArIG------------------rQHI
                   bb     bbbb    bbbb  bbb                        b

                           260       270       280       290       300 
2bspa  ( 227 )    dAs-ngAnyITMSyNyYh-----------dHdkSSiFGssdsktsDdgkL
1idk   ( 180 )    vLgTsadnrVSLTnNyIdGvSdySAtçdgyHywAIyLdGd--------aD
2pec   ( 170 )    dIk-gaSntVTVSYNyIh-----------gVkkVglDGssssdt----gR
1qcxa  ( 180 )    vLGtsaDnrVTISySlIDGrsdySAtçnghHywGVyLdGs--------nD
                  bb      bbbbb  bbb                 bb             

                           310       320       330       340       350 
2bspa  ( 265 )    kITLhHNrYknIvqkAPrVrF-GqVHVYNNYYegstssssYpFsyAWGIG
1idk   ( 222 )    lVTMkgNyIyhTSGrSPkVqdnTLLHAVNNyWydIs-------ghAFeIg
2pec   ( 204 )    nITYHHNyYndVnarLPLQrg-glVHAYNNLYtnIt-------gSGLNVr
1qcxa  ( 222 )    mVTLKGNyFynLSGrMPkVqgnTLLHAVNNLFhnFd-------ghAFeIg
                  bbbbb  bbb       bb    bbbbb  bbbbb           bbb 

                           360       370       380       390       400 
2bspa  ( 314 )    ksSkIyAqnNvIdVpglsaakTIsvfs---gGtaLyDsgTlLng------
1idk   ( 265 )    egGyVLAEGNvFqnVd------tVlet-ye--geAFTVps----staGev
2pec   ( 246 )    qnGqAlIenNwFekAi----NPVTSRydgknfGtWvLkgNnItkpadfst
1qcxa  ( 265 )    tgGyVLAEGNvFqdVn------vVVetpis--gqLFSSpd----antNqq
                     bbbbb  bbbbbb      bbb        bbb              

                           410       420       430       440       450 
2bspa  ( 355 )    -----------------tqinASaanglsssVgwtPslhgsidasanVks
1idk   ( 302 )    ÇstyLgrdÇviNgfgsSgtFsedstsFLsdFeg---kniAsAsaytsVas
2pec   ( 292 )    y-------sItwtadtkpyvNAds--WtstgtFptvaynyspVsaqÇVkd
1qcxa  ( 303 )    ÇasvFgrsÇqlNafgnSgsMsgsdtsIIskFag---ktiAaAhppgaiaq
                                                              333aaa

                           460       470 
2bspa  ( 388 )    nVinqAGagkln        
1idk   ( 349 )    rVvanAGqgnl         
2pec   ( 333 )    kLpgyAGvgknlatLtstaç
1qcxa  ( 350 )    wTmknAGqgk          
                  aaaaa               


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